Thanks! Ya, it was a rookie mistake not taking the angle of the pillars into account when I did my layout. I'm pretty sure that I won't forget that next time with the extra work it's going to cause this time LOL.
On the advice of my buddy, I'm going to setup my door tops first with minimal tacks, then fit the front of the roof down to them. That way, I will get the window openings looking right from the start since they are what draws the eye the most.
I picked up a louvered hood for it over the weekend. I'm not sure if I want a hood on it or not yet but I'm going to set it up so that I can put it on. That way, the option is there.