Well, I dug into the cooling fan problem. Kind of like the thread about taking credit for something I didn't do, I now wish I could pin the blame for something I did on someone else.
After bypassing the thermostat, and checking all connections, I tore apart the center console where a lot of my wiring is. I found a rouge wire that I had run to power the fan with a switch and bay pass the thermostat. I had not yet put in the switch. The wire fell down and was rubbing in the driveshaft, and shorting out the circuit. My bad. I think I have it fixed now.